Pumpkin Pecan Cupcakes with Cream Cheese Frosting
Pumpkin pecan cupcakes combine pumpkin, warm fall spices and crunchy pecans in an easy fall dessert that’s perfect for all season long.
The pumpkin cupcakes are topped with cream cheese frosting, chopped pecans and a gooey pecan pie topping for a little something extra in every bite.
They have all the flavors you expect from pumpkin and pecan pie, but in an easy-to-serve cupcake.
Make them for Thanksgiving dessert, fall parties, bake sales or whenever you’re craving a seasonal treat.
Best of all, you can bake the cupcakes ahead of time and add the frosting and pecan topping before serving.

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Why You’ll Love These Pumpkin Pecan Cupcakes
- Full of fall flavor – Pumpkin, brown sugar and warm spices give the cupcakes that classic pumpkin spice flavor.
- The best combination of textures – Soft pumpkin cupcakes, creamy frosting and crunchy pecans work so well together.
- Pecan pie inspired topping – The gooey pecan topping makes these a little more special than traditional pumpkin cupcakes.
- Perfect for fall gatherings – Serve them for Thanksgiving dessert, Halloween parties, fall potlucks or bake sales.
- Make them ahead – Bake the cupcakes a day in advance and decorate them when you’re ready to serve.
What are pumpkin pecan cupcakes made of?
- Pumpkin puree – Gives this cupcake recipe their pumpkin flavor and helps create a soft texture. Be sure to use pure pumpkin puree, not pumpkin pie filling.
- Brown sugar – Adds sweetness with a deeper caramel-like flavor that pairs especially well with pumpkin and pecans.
- Fall spices – Cinnamon, allspice, ginger, nutmeg and cloves give the cupcakes their warm pumpkin spice flavor.
- Pecans – Add crunch and nutty flavor to the cupcakes and topping.
- Cream cheese frosting – The tangy frosting balances the sweetness of the pumpkin cupcakes and pecan topping.
- Pecan topping – A sweet, gooey pecan mixture gives the cupcakes their pecan pie-inspired finish.
How to Make Pumpkin Pecan Cupcakes
- Start by mixing together flour, chopped pecans, pumpkin pie spices, baking powder, baking soda, and salt.
- In a separate bowl, beat oil, eggs, brown sugar, pumpkin purée, and vanilla until smooth.
- Combine the wet and dry ingredients, being careful not to overmix, and divide the batter into cupcake liners using an ice cream scoop to portion the batter evenly.
- Bake until a toothpick comes out clean, then cool completely.
- Frost with a fluffy cream cheese frosting, roll the tops in crunchy pecans, and finish with a dollop of frosting.
- For a final festive touch, make a quick stovetop pecan pie topping and spoon it over each cupcake.

Don’t Forget To…
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Yes. Bake the cupcakes a day ahead and store them unfrosted in an airtight container. Frost and add the pecan topping before serving.
Once they’re topped with cream cheese frosting, store the cupcakes in an airtight container in the refrigerator. Let them sit at room temperature for about 10-15 minutes before serving.
Yes. Freeze the unfrosted cupcakes for up to 2 months. Thaw them before adding the cream cheese frosting and pecan topping.
Yes, freeze the unfrosted cupcakes for up to 2 months. Thaw overnight in the fridge before frosting and topping.

HONGBAKE Muffin Pan for Baking, Nonstick Cupcake Tin 12 Cup, 2 Pack Cup Cake Tray, Premium Cheesecake Pans, Dishwasher Safe – Dark Grey
Bake Choice Non-stick 200pcs Standard Cupcake Liners for Baking, Natural, Food-grade Cupcake Wrapper, Greaseproof Parchment Muffin Liners
Nature’s Eats, Pecan Pieces, 16 Oz
Allspice Ground – 2 oz
McCormick Gourmet Organic Ground Ginger, 1.25 Oz
McCormick Ground Nutmeg, 1.1 oz
Simply Organic Ground Cloves 2.82 Ounce Jar, Pure Organic Ground Cloves, Kosher, Pungent Warm Aroma, Bittersweet & Spicy
Cupcake Carrier 24 Count – Sturdy Cupcake Holder with Lid & 2 Handles, Stylish Two-Tier Cupcake Carrier/Stand, Spacious 3.5” Top & Bottom Tray
More Fall Desserts to Try
If you’re loving these pumpkin cupcakes, you’ll want to check out these other fall recipes too:
- Pecan pie cupcakes are a delicious spin on the classic dessert, baked into a handheld treat with gooey pecan filling.
- Wondering what to do with leftover pumpkin pie filling—turn it into easy pumpkin muffins, smoothies, or even a fall flavored no-bake dip recipe the whole family will love.
- Thanksgiving cupcake recipes are the perfect way to add a festive and fun touch to your holiday dessert table.


Pumpkin Pecan Cupcakes
Ingredients
Cupcakes:
- 1 C all-purpose flour leveled
- 1 tsp baking powder
- ½ tsp baking soda
- ½ tsp kosher salt
- 1 tsp ground cinnamon
- ½ tsp ground allspice
- ½ tsp ground ginger
- ¼ tsp ground nutmeg
- ¼ tsp ground cloves
- ½ C canola oil
- 2 large eggs
- ¾ C light brown sugar packed
- 1 C canned pumpkin purée
- 1 tsp pure vanilla extract
Frosting:
- 1 package 8oz cream cheese (room temp)
- 1 stick unsalted butter room temp
- 3 C powdered sugar
- 1 tsp pure vanilla extract
- ⅛ tsp kosher salt
- ½ C pecans chopped
Pecan Garnish:
- 1 C granulated sugar
- 3 Tbsp light brown sugar packed
- ½ tsp salt
- 1 C dark corn syrup
- 1 Tbsp cold water
- 2 tsp cornstarch
- ⅓ C unsalted butter room temp
- 1 C pecans chopped
Instructions
- Preheat oven to 350 degrees.
- Put cupcake liners in the muffin tin.
- Put the 1⁄2 cup of chopped pecans in a bowl.
- Add flour, baking powder, baking soda, salt and pumpkin pie spice (cinnamon, allspice, ginger, nutmeg, and cloves) in a large mixing bowl.
- Whisk to blend. Set aside.
- Add the oil, eggs, brown sugar, pumpkin puree, and vanilla in a separate bowl. Use an electric mixer to mix all ingredients.
- Slowly add the wet ingredients to the dry ingredients, continue to beat while adding the flour mixture until completely combined.
- Set aside. Whisk the oil, eggs, brown sugar, pumpkin, and vanilla extract together until
- combined. Pour the wet ingredients into the dry ingredients and use a mixer until completely combined. (Batter will be thick.)
- For a light and airy cupcake, mix the batter until just combined. Overmixing will lead to a denser texture.
- Divide batter using an ice cream scoop into the paper liners (fill about 2/3 full)
- Bake at 350 degrees for 20-22 minutes. Your batch of cupcakes are done with an inserted tooth pick comes out clean from the center of the cupcakes.
- Remove from the oven when done and set aside on a wire rack to cool completely before frosting.
- Cream the cream cheese and butter together in a large bowl with an electric mixer on medium speed until they become creamy and smooth.
- Slowly add in three cups of powdered sugar, vanilla and salt beating on low speed for about 30 seconds.
- Increase the speed to high beating for 2 more minutes. (Add an additional 1⁄4 cup to increase the thickness of the frosting. )
- When ready to frost the cupcakes use a piping bag with a large round tip.
- Directly after frosting the cupcakes, roll the frosted part of the cupcake in the chopped bits of crunchy pecans.
- Top with an additional dollop of frosting in the center of the cupcake. Set aside.
- Pecan Garnish:Add sugar, brown sugar, corn syrup, and butter in a heavy saucepan over medium heat.
- Combine cold water and cornstarch in a small bowl. Stirring to blend before adding in the saucepan.
- Increase heat to high bringing the mixture to a boil.
- Stir in the salt, vanilla and pecans.
- Continue on the stove until the mixture reaches a boil again.
- Continue to stir until the mixture thickens. Set aside to cool.
- Add a tablespoon of the pecan mixture to the tops of each cupcakes.









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